Methods
Prediction of Protein Structure with AlphaFold2
Prediction of Protein Structure with AlphaFold2
AlphaFold2 was used in a Google CoLab Pro Session to perform all protein structure predictions. Protein amino acid sequences were obtained from UniProt.
Liquid-Liquid Phase Separation Prediction
Liquid-Liquid Phase Separation Prediction
Four online tools were used to predict the likelihood of protein liquid-liquid phase separation: deePhase v1, PSPredictor, FuzDrop, catGRANULE, and PSPer. All programs aside from catGRANULE returned a probability score between 0 and 1.
PDB File Visualization
PDB File Visualization
NCBI's iCn3D was used to visualize AlphaFold2 PDB files online. ScreenToGif was used to capture videos of rotating structures and convert them to GIFs.